Automating the Digital Pathology Workflow

What is Digital Pathology?

Digital pathology is the image-based computer analysis of a biological sample for both clinical and non-clinical applications. Digital pathology is not considered a medical discipline but rather a process or workflow associated with image acquisition, analysis, interpretation, and storage to assist with timely and accurate information. In clinical applications, digital pathology provides a fast and efficient way for healthcare workers to converge on a diagnosis. The digital nature of samples and the analysis process makes it easier for pathologists, histopathologists, oncologists, and other medical experts to share and collaborate. Non-clinical applications include research, education, and biopharmaceutical development. Similar to the clinical side, collaborating with digital images accelerates research timelines and decreases drug development time, especially if we talk about innovative digital imaging solutions such as whole slide imaging.

Whole slide imaging is a critical component of digital pathology workflows, allowing pathologists to scan entire tissue samples at high resolution for detailed analysis and diagnosis. However, whole slide imaging can be time-consuming and labor-intensive, requiring careful handling of delicate tissue samples and precise positioning of the imaging equipment using slide scanners. By automating the handling and positioning of samples and equipment, motion control can significantly improve the efficiency and accuracy of whole slide imaging workflows, ultimately improving patient outcomes and advancing the field of digital pathology. We offer a range of motion control solutions specifically designed for whole slide imaging workflows, including linear stages, nanopositioning stages, and custom motion control systems that help you tackle any automation and accuracy challenges.

While digital pathology instrument architectures will differ between manufacturers and end-use requirements, three overarching sub-systems are the building blocks of any microscopy applications: moving the slide into the camera’s field of view (X and Y Motion), focusing on the sample (Z axis), and managing the optical system integration.

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Moving the Slide into the Field of View

Speed and accuracy of whole slide imaging (WSI) in digital pathology have been empowered by the advancements in Automated Imaging. The workflow starts with a biological sample (such as blood or tissue) that has been prepared and placed under a glass microscope slide. Instead of being immediately examined by a histologist under a microscope, the entire histology glass slide is loaded into an automated microscope and scanned by the high-resolution camera in the slide scanner. The field of view (FOV) of the camera is significantly smaller than the sample being scanned. The software and motion control system must capture many images and build a complete digital replica of the physical sample. Similar to Next Generation Sequencing (NGS) instruments, digital pathology microscopes generally scan samples using two different motion types: field-sequential imaging or constant velocity imaging.

 

Field-sequential Imaging

Field-sequential imaging is the process of capturing smaller, detailed images when the sample is stationary and concatenating the images to recreate the full biological sample. The sequence of motion is: move, stop, image, and repeat. The motion platform must move the sample to the field of view, remain stationary during image acquisition, quickly move the sample to the next FOV and settle again for imaging.  The motion platform is a combination of precise mechanical and efficient control solutions that allow the instrument to move the sample with minimal system resonance.  Key performance metrics are move and settle time as well as position jitter during image acquisition. Any motion (jitter) during image acquisition that exceeds the optical system’s diffraction-limited resolution will cause blurring of the image.  For example, the image quality of a system using a 0.80 NA objective may degrade as the camera detects unwanted motion. This unwanted motion can be as small as several hundred nanometers at short wavelengths.

While field-sequential imaging typically translates into a lower-cost system, the portion of the time spent moving (and settling) can lead to lower overall throughput. This methodology may work for low-throughput systems or laboratories that have limited bench space. The timing diagram below visualizes how the sample illumination (and subsequent camera image capture) occurs while the stage is maintaining its position.  While the nanopositioning stage is moving to the next field of view for imaging, the previously captured image can be transferred in parallel with the stage move.  Movement from one image capture to the next can be limited either by the controller or the mechanical structure of the stage and system. While our customers optimize their data transfer process, we have mastered our industry-leading tools for optimizing step and settle time.

Field-sequential Imaging Process
Field-sequential Imaging Process

Microscopy design experts turn to Dover Motion when challenged to reduce step-and-settle time and increase overall machine throughput.  Our nanopositioning expertise and extensive experience in optics enable us to develop integral, application-ready motion products. For example, the Dover Motion SmartStage™ XY nanopositioning stage can provide the following benefits: 

  • Reduced settling time:
    • Settling ±50 nm in <45 msec after 3mm platform move
    • Settling ±50 nm in <15 msec after 333 µm platform move
  • Bi-directional repeatability <25 nm
  • Sub-micron accuracy
  • Holding Stability 5 nm RMS
SmartStage XY Linear Positioning Stage Product Photo
SmartStage XY Nanopositioning Stage

Constant Velocity Imaging

Constant velocity scanning (sometimes called “fly-over mode”) is the most popular option for high-throughput microscopy and whole slide imaging applications. Most whole slide scanners have input capacities of between 100 and 1,000 slides. The consistent motion of the sample, combined with a synchronized imager, enables high-resolution, high-throughput data collection.  As throughput requirements increase especially for slide scanners, more digital pathology platform companies are seeking out the expertise and motion technology provided by Dover Motion.  We have made countless constant velocity motion systems for decades. We have invested in the expertise of our staff as well as our product portfolio, which includes both mechanical and control-based solutions.  Over the decades, we’ve invested in technologies such as crossed roller guideways, low-noise electronic drive and control, sub-nanometer resolution feedback devices, and advanced electronic triggering capabilities (TOP).  Dover Motion first developed Trigger On Position capabilities for demanding semiconductor applications in the late 1980s. We now leverage this approach for microscopy applications that use Time Delay Integration (TDI) cameras.  We integrated Trigger On Position (TOP) inside of our SmartStage XY motion controller to provide hardware triggering to line scan cameras based on the actual position of the stage and sample. This provides increased accuracy of the image acquisition during slide scanning.  TOP is typically used to trigger cameras and lasers to synchronize them with the motion and position of the stage.  For example, combining this software capability, smooth crossed roller bearings, and our ultra-high-performance encoder inside of the SmartStage XY nanopositioning stage enables low spatial triggering jitter and consistent platform movement over the entire travel. As a result, we maintain extremely low-velocity ripple while scanning and ± 30nm stability at rest.  Our nanopositioning stage solutions provide the following benefits:

  • 5 nm resolution
  • Bi-directional repeatability <25 nm
  • <10 nm RMS cyclic error
  • Camera triggers synchronized to position of the sample with <100 ns
Position tracking error; 20 nanometers per vertical division
Position tracking error; 20 nanometers per vertical division

Focusing on the Sample

Positioning the sample under a microscope (X & Y axis) is only one piece of the puzzle. Since no sample is perfectly flat, another important aspect is to dynamically focus the objective for the best quality image. The ability to position the Z-axis assists in obtaining the target optical resolution. The required resolution differs by application. For example, a simple mammalian cell counting application may use a resolution of 2 μm, while digital pathology applications targeting fine structural morphologies of cell nuclei may require 0.35 μm resolution. There are two fundamental methods of focusing in microscopy: contrast and laser autofocusing.

Contrast (Software) Focusing

Contrast focusing is primarily a software-based approach where the image from the camera is analyzed as the Z-axis steps through the nominal and presumed focal planes.  Images are then put through a high-pass filter that derives a value for fine-scale contrast.  While this method does not require costly autofocusing equipment, the tradeoff is slower focus time. Typically, the Z-axis moves the objective 15 to 30 times before the optimal image can be captured.

Dover Motion created the DOF-5 nanopositioning stage to address the need for a repeatable, quick-to-settle Z-Axis.  The DOF-5 provides the following benefits for contrast focusing:

  • Fast, accurate, and repeatable 100 nm moves
  • 5nm RMS position stability
  • 25nm repeatability
  • High throughput steps that are quick to settle
DOF-5 Nanopositioning Stage
DOF-5 Nanopositioning Stage

Laser Autofocus

Optical-based autofocusing relies on sending a laser diode beam down through the objective where it reflects off the sample or a nearby glass surface. This continuous tracking laser autofocus method provides the highest performance but can be considerably more expensive to implement.  This architecture allows the Z-axis stage to be driven by the digital laser autofocus.  Dover Motion has been building high-performance, direct drive Z nanopositioing stages for many years with thousands of systems in the field, many of which operate around the clock.  Our highest resolution focusing stage is our DOF-5 nanopositioning stage for objective focusing.  Applications using the DOF-5 benefit from:

  • Fast, accurate, and repeatable 100nm moves
  • Integrated optical linear encoder with 1.25nm or 5nm resolution
  • Internal, high performance servo drive and control with reduced cabling
  • Direct hardware connection to Autofocus systems for easy position control

Managing Optical System Integration

There continues to be a need for many different types of machine architectures to support all conceivable use cases. Often special use cases leverage low-throughput instruments that use techniques such as fluorescence imaging. While processes may vary between platforms and companies, all optical-based instruments are looking for the return of specific light wavelengths. These instruments rely on precision optical filters, commonly on rotary indexers or linear arrays.  Often referred to as “filter cubes”, these assemblies contain an excitation filter, an emission filter, and occasionally a beam splitter.  Each cube must be quickly and accurately moved into the optical path to pick up the minimal number of photons being emitted by the fluorophore.  We have a robust history of working on optical and fluorescence imaging applications.  The experts at Dover Motion are consulted on optical architecture options where we work with our customers to design a system with the highest performance and throughput. For example, our expertise provides the following benefits:

  • Cost-effective options for both rotary or linear indexing architectures
  • Multiple technologies to support a range of price and performance requirements
  • Custom design experience for unique filter-changing needs.

The Dover Motion Expertise

Dover Motion provides collaborative solutions for motion control digital pathology platforms so that our customers can focus on what they do best.  Our technical experts have a deep understanding of motion control systems, optical imaging systems as well as ancillary application technologies.  We understand the environmental impacts of the various systems on the imaging process and can prevent negative effects before they arise.  Due to our years of experience in the industry, we are well-versed in automated microscopy, whole slide imaging, control theory, fluorescence microscopy, vibration control, optimizing servo tuning, and structural resonances.  Collaborating with our experts enables digital pathology platforms to decrease instrument development time and prevent system challenges before they arise.  

Here are some examples of where Dover Motion’s expertise can be of value: 

  • We consider the impact of other systems, including cables, tubing and temperature control elements and prevent them from hindering the precise platform motion. 
  • We provide best practices for other critical controlled systems, such as temperature control. 
  • We normalize the sample plane to the optical beam path, either statistically or dynamically. 
  • We offer guidance for managing negative system effects (i.e., consequences of isolation). 
  • We include advanced methods to further reduce step and settle time. 
  • We support the rotary filter indexer or linear array control. 

Building the Right Precision Motion Control System

Dover Motion offers a variety of standard products for your precision motion control needs, and we also specialize in collaborating with our clients to configure the right motion solution for their unique application. With more than 50 years of experience in the life sciences, diagnostics, and factory automation industries, we understand your needs and industry and can provide you with the flexibility you need to hit your cost and schedule targets. 

Related Products

The DOF-5™  microscope stage is optimized for objective focusing with increased travel, higher bandwidth, and lower cost than piezo stages.

wdt_ID Travel 5 mm
1 Resolution 1.25 nm
2 Repeatability < 50 nm
3 Bandwidth > 225 Hz

The award winning SmartStage™ XY microscope stage offers high precision and includes an embedded controller inside the stage.

wdt_ID Travel 50 - 200 mm
1 Accuracy ≤ 10 μm
2 Repeatability 0.5 μm
3 Payload up to 6 kg

The XYMR open frame XY microscope stage offers exceptional flatness, straightness, and accuracy. Ideal for cell counting and analysis.

wdt_ID Travel 150 mm
1 Accuracy 30 μm TIR
2 Repeatability < ± 1.5 μm
3 Payload 10 kg